Serialized Form

Package edu.uchsc.ccp.iaa

Class edu.uchsc.ccp.iaa.IAAException extends Exception implements Serializable

Package edu.uchsc.ccp.knowtator

Class edu.uchsc.ccp.knowtator.ComplexSlotMentionValueWidget extends InstanceListWidget implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

mentionUtil

MentionUtil mentionUtil

annotationUtil

AnnotationUtil annotationUtil

kpu

KnowtatorProjectUtil kpu

textSourceUtil

TextSourceUtil textSourceUtil

browserTextUtil

BrowserTextUtil browserTextUtil

kb

KnowledgeBase kb

displayColors

DisplayColors displayColors

logger

Logger logger

Class edu.uchsc.ccp.knowtator.InvalidSpanException extends RuntimeException implements Serializable

serialVersionUID: 621814331L

Class edu.uchsc.ccp.knowtator.Knowtator extends AbstractTabWidget implements Serializable

serialVersionUID: 131L

Serialized Fields

annotationSchemaPane

JSplitPane annotationSchemaPane

clsTreePanel

JPanel clsTreePanel

clsTreeLabel

JLabel clsTreeLabel

clsTree

AnnotationSchemaTree clsTree

clsFinder

ClsTreeFinder clsFinder

instancesPanel

JPanel instancesPanel

instancesPaneLabel

JLabel instancesPaneLabel

instancesPane

JScrollPane instancesPane

instancesList

AnnotationSchemaInstancesList instancesList

textViewerPanel

JPanel textViewerPanel

selectedAnnotationLabel

JLabel selectedAnnotationLabel

deleteAnnotationButton

JButton deleteAnnotationButton

copyAnnotationButton

JButton copyAnnotationButton

spanEditPanel

SpanEditPanel spanEditPanel

filterSelectionLabel

JLabel filterSelectionLabel

prevFilterButton

JButton prevFilterButton

selectAnnotationFilterButton

JButton selectAnnotationFilterButton

nextFilterButton

JButton nextFilterButton

nextAnnotationButton

JButton nextAnnotationButton

previousAnnotationButton

JButton previousAnnotationButton

fastAnnotatePanel

JPanel fastAnnotatePanel

fastAnnotateLabel

JLabel fastAnnotateLabel

fastAnnotateSelectButton

JButton fastAnnotateSelectButton

fastAnnotateQuitButton

JButton fastAnnotateQuitButton

consensusModePanel

JPanel consensusModePanel

consensusModeLabel

JLabel consensusModeLabel

consensusModeCreateButton

JButton consensusModeCreateButton

consensusModeSelectButton

JButton consensusModeSelectButton

consensusModeRestartButton

JButton consensusModeRestartButton

consensusModeConsolidateButton

JButton consensusModeConsolidateButton

consensusModeQuitButton

JButton consensusModeQuitButton

consensusModeProgressLabel

JLabel consensusModeProgressLabel

lastSelected

Selectable lastSelected

popupMenu

JPopupMenu popupMenu

textSourceSelector

TextSourceSelector textSourceSelector

textPane

KnowtatorTextPane textPane

textViewer

TextViewer textViewer

notifyLabel

JLabel notifyLabel

textSourceInstanceDisplay

InstanceDisplay textSourceInstanceDisplay

instanceDisplay

AnnotationInstanceDisplay instanceDisplay

mentionDisplay

MentionDisplay mentionDisplay

textSourceInstance

Instance textSourceInstance

saveAsMenuItem

JMenuItem saveAsMenuItem

newProjectMenuItem

JMenuItem newProjectMenuItem

knowtatorMenu

JMenu knowtatorMenu

configureMenuItem

JMenuItem configureMenuItem

fastAnnotateItem

JCheckBoxMenuItem fastAnnotateItem

findAnnotateMenuItem

JMenuItem findAnnotateMenuItem

exportToXMLMenuItem

JMenuItem exportToXMLMenuItem

importFromXMLMenuItem

JMenuItem importFromXMLMenuItem

annotationRemovalMenuItem

JMenuItem annotationRemovalMenuItem

showInstancesMenuItem

JCheckBoxMenuItem showInstancesMenuItem

mergeAnnotationsItem

JMenuItem mergeAnnotationsItem

batchAnnotatorChangeItem

JMenuItem batchAnnotatorChangeItem

batchAnnotationSetChangeItem

JMenuItem batchAnnotationSetChangeItem

iaaItem

JMenuItem iaaItem

sortSelectionMenuItem

JMenuItem sortSelectionMenuItem

consensusSetItem

JCheckBoxMenuItem consensusSetItem

kpu

KnowtatorProjectUtil kpu

manager

KnowtatorManager manager

annotationUtil

AnnotationUtil annotationUtil

textSourceUtil

TextSourceUtil textSourceUtil

spanUtil

SpanUtil spanUtil

filterUtil

FilterUtil filterUtil

mentionUtil

MentionUtil mentionUtil

displayColors

DisplayColors displayColors

browserTextUtil

BrowserTextUtil browserTextUtil

findAnnotateDialog

FindAnnotateDialog findAnnotateDialog

defaultAnnotatorInstance

Instance defaultAnnotatorInstance

showInstances

boolean showInstances

alphabeticalComparator

Comparator<T> alphabeticalComparator

spanComparator

Comparator<T> spanComparator

instancesListMouseListener

MouseListener instancesListMouseListener

protegeFrame

JFrame protegeFrame

logger

Logger logger

fastAnnotateButtonMap

Map<K,V> fastAnnotateButtonMap

Map containing the toggle buttons that are displayed in the fast annotate tool bar.

fastAnnotateButtonGroup

ButtonGroup fastAnnotateButtonGroup

The button group associated with the toggle buttons on the fast annotate tool bar. This button group assures that only one is selected at a time.

fastAnnotateScrollableBar

com.languageExplorer.widgets.ScrollableBar fastAnnotateScrollableBar

The component that provides the scrolling for the fast annotate tool bar.

Class edu.uchsc.ccp.knowtator.SimpleSlotMentionValueWidget extends TextFieldWidget implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

mentionUtil

MentionUtil mentionUtil

annotationUtil

AnnotationUtil annotationUtil

kpu

KnowtatorProjectUtil kpu

Class edu.uchsc.ccp.knowtator.SlotMentionValueWidget extends AbstractListWidget implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

mentionUtil

MentionUtil mentionUtil

annotationUtil

AnnotationUtil annotationUtil

kpu

KnowtatorProjectUtil kpu

_addValueAction

AllowableAction _addValueAction

_removeValueAction

AllowableAction _removeValueAction

logger

Logger logger

Class edu.uchsc.ccp.knowtator.SlotMentionWidget extends edu.stanford.smi.protegex.widget.contains.ContainsWidget implements Serializable

serialVersionUID: 0L

Serialized Fields

mentionUtil

MentionUtil mentionUtil

slotMentionComparator

SlotMentionWidget.SlotMentionComparator slotMentionComparator

Class edu.uchsc.ccp.knowtator.SpanWidget extends StringListWidget implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

kpu

KnowtatorProjectUtil kpu

annotationUtil

AnnotationUtil annotationUtil

Package edu.uchsc.ccp.knowtator.event

Class edu.uchsc.ccp.knowtator.event.AnnotationCreatedEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

createdAnnotation

SimpleInstance createdAnnotation

Class edu.uchsc.ccp.knowtator.event.CurrentAnnotationsChangeEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

filteredAnnotations

List<E> filteredAnnotations

partiallyFilteredAnnotations

List<E> partiallyFilteredAnnotations

Class edu.uchsc.ccp.knowtator.event.FilterChangedEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

newFilter

SimpleInstance newFilter

consensusMode

boolean consensusMode

Class edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

selectedAnnotation

SimpleInstance selectedAnnotation

Class edu.uchsc.ccp.knowtator.event.SelectedClsChangeEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

selectedCls

Cls selectedCls

Class edu.uchsc.ccp.knowtator.event.SelectedSpanChangeEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

selectedSpans

List<E> selectedSpans

Class edu.uchsc.ccp.knowtator.event.SpanEditEvent extends EventObject implements Serializable

serialVersionUID: 0L

Serialized Fields

annotation

SimpleInstance annotation

Package edu.uchsc.ccp.knowtator.textsource

Class edu.uchsc.ccp.knowtator.textsource.TextSourceAccessException extends Exception implements Serializable

Class edu.uchsc.ccp.knowtator.textsource.TextSourceSelector extends JPanel implements Serializable

Serialized Fields

panel

JPanel panel

textSourceCollectionLabel

JLabel textSourceCollectionLabel

previousTextSourceButton

JButton previousTextSourceButton

nextTextSourceButton

JButton nextTextSourceButton

selectTextSourceButton

JButton selectTextSourceButton

findTextSourceButton

JButton findTextSourceButton

openTextSourceCollectionButton

JButton openTextSourceCollectionButton

border

TitledBorder border

textSourceUtil

TextSourceUtil textSourceUtil

project

Project project

parent

Component parent

toolBar

JToolBar toolBar

Package edu.uchsc.ccp.knowtator.ui

Class edu.uchsc.ccp.knowtator.ui.AnnotationInstanceDisplay extends InstanceDisplay implements Serializable

Serialized Fields

kpu

KnowtatorProjectUtil kpu

project

Project project

Class edu.uchsc.ccp.knowtator.ui.AnnotationPicker extends JComponent implements Serializable

serialVersionUID: 0L

Serialized Fields

logger

Logger logger

_list

JList _list

annotations

List<E> annotations

mouseOverIndex

int mouseOverIndex

renderer

ListCellRenderer renderer

manager

KnowtatorManager manager

displayColors

DisplayColors displayColors

annotationUtil

AnnotationUtil annotationUtil

Class edu.uchsc.ccp.knowtator.ui.AnnotationSchemaFinder extends ClsTreeFinder implements Serializable

Class edu.uchsc.ccp.knowtator.ui.AnnotationSchemaInstancesList extends SelectableList implements Serializable

Serialized Fields

manager

KnowtatorManager manager

kb

KnowledgeBase kb

kpu

KnowtatorProjectUtil kpu

annotationUtil

AnnotationUtil annotationUtil

mentionUtil

MentionUtil mentionUtil

textSourceUtil

TextSourceUtil textSourceUtil

browserTextUtil

BrowserTextUtil browserTextUtil

renderer

ColorFrameRenderer renderer

popupMenu

JPopupMenu popupMenu

Class edu.uchsc.ccp.knowtator.ui.AnnotationSchemaTree extends SelectableTree implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

kb

KnowledgeBase kb

annotationUtil

AnnotationUtil annotationUtil

mentionUtil

MentionUtil mentionUtil

kpu

KnowtatorProjectUtil kpu

textSourceUtil

TextSourceUtil textSourceUtil

browserTextUtil

BrowserTextUtil browserTextUtil

renderer

ColorFrameRenderer renderer

popupMenu

JPopupMenu popupMenu

logger

Logger logger

Class edu.uchsc.ccp.knowtator.ui.ColorFrameRenderer extends FrameRenderer implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

displayColors

DisplayColors displayColors

browserTextUtil

BrowserTextUtil browserTextUtil

Class edu.uchsc.ccp.knowtator.ui.KnowtatorTextPane extends JTextPane implements Serializable

serialVersionUID: 0L

Serialized Fields

logger

Logger logger

annotationSpans

Set<E> annotationSpans

annotationSpanColors

Map<K,V> annotationSpanColors

annotationSpanLines

Map<K,V> annotationSpanLines

annotationSpanSubtexts

Map<K,V> annotationSpanSubtexts

selectionSpans

List<E> selectionSpans

selectedAnnotationSpans

List<E> selectedAnnotationSpans

painters

Map<K,V> painters

linePainters

Map<K,V> linePainters

dashedLinePainters

Map<K,V> dashedLinePainters

verticalLinePainters

Map<K,V> verticalLinePainters

text

String text

manager

KnowtatorManager manager

annotationUtil

AnnotationUtil annotationUtil

mentionUtil

MentionUtil mentionUtil

displayColors

DisplayColors displayColors

browserTextUtil

BrowserTextUtil browserTextUtil

spanUtil

SpanUtil spanUtil

tokenRegex

String tokenRegex

tokenPattern

Pattern tokenPattern

highlighter

Highlighter highlighter

lineHighlightColor

Color lineHighlightColor

window2AnnotationsMap

Map<K,V> window2AnnotationsMap

windowSize

int windowSize

popupMenu

JPopupMenu popupMenu

mouseButtonDown

boolean mouseButtonDown

scrollPane

JScrollPane scrollPane

doubleSpace

Style doubleSpace

initComplete

boolean initComplete

Class edu.uchsc.ccp.knowtator.ui.MentionDisplay extends InstanceDisplay implements Serializable

serialVersionUID: 0L

Serialized Fields

mentionUtil

MentionUtil mentionUtil

annotationUtil

AnnotationUtil annotationUtil

Class edu.uchsc.ccp.knowtator.ui.ModalDialog extends JDialog implements Serializable

serialVersionUID: 0L

Serialized Fields

_result

int _result

_panel

Component _panel

_buttonsPanel

JPanel _buttonsPanel

_closeCallback

ModalDialog.CloseCallback _closeCallback

_enableCloseButton

boolean _enableCloseButton

Class edu.uchsc.ccp.knowtator.ui.SpanEditPanel extends JPanel implements Serializable

serialVersionUID: 0L

Serialized Fields

manager

KnowtatorManager manager

annotationDisplay

AnnotationInstanceDisplay annotationDisplay

spanUtil

SpanUtil spanUtil

growLeftAnnotationButton

JButton growLeftAnnotationButton

shrinkLeftAnnotationButton

JButton shrinkLeftAnnotationButton

shrinkRightAnnotationButton

JButton shrinkRightAnnotationButton

growRightAnnotationButton

JButton growRightAnnotationButton

Package edu.uchsc.ccp.knowtator.util

Class edu.uchsc.ccp.knowtator.util.ConsensusException extends Exception implements Serializable

Package edu.uchsc.ccp.knowtator.widget

Class edu.uchsc.ccp.knowtator.widget.AnnotatedClassWidget extends ClsFieldWidget implements Serializable

serialVersionUID: 0L

Package edu.uchsc.ccp.knowtator.wizards

Class edu.uchsc.ccp.knowtator.wizards.FindAnnotateDialog extends JDialog implements Serializable

serialVersionUID: 0L

Serialized Fields

searchForLabel

JLabel searchForLabel

searchStringTextField

JTextField searchStringTextField

annotateWithLabel

JLabel annotateWithLabel

annotationClsList

SelectableList annotationClsList

selectClsButton

JButton selectClsButton

regularExpressionCheckBox

JCheckBox regularExpressionCheckBox

matchCaseCheckBox

JCheckBox matchCaseCheckBox

matchWordsCheckBox

JCheckBox matchWordsCheckBox

spanCapturingGroupsCheckBox

JCheckBox spanCapturingGroupsCheckBox

findNextButton

JButton findNextButton

findPreviousButton

JButton findPreviousButton

annotateButton

JButton annotateButton

annotateAllButton

JButton annotateAllButton

undoButton

JButton undoButton

closeButton

JButton closeButton

annotationCls

Cls annotationCls

project

Project project

parent

JFrame parent

manager

KnowtatorManager manager

kpu

KnowtatorProjectUtil kpu

text

String text

searchMark

int searchMark

textPane

KnowtatorTextPane textPane

matcher

Matcher matcher

currentlySelectedSpanAlreadyAnnotated

boolean currentlySelectedSpanAlreadyAnnotated

Class edu.uchsc.ccp.knowtator.wizards.WizardFrame extends JDialog implements Serializable

serialVersionUID: 0L

Serialized Fields

previousButton

JButton previousButton

nextButton

JButton nextButton

cancelButton

JButton cancelButton

contentPane

JPanel contentPane

Package edu.uchsc.ccp.knowtator.xml

Class edu.uchsc.ccp.knowtator.xml.KnowtatorXMLException extends Exception implements Serializable

serialVersionUID: 621813442L