Hierarchy For All Packages

Package Hierarchies:

edu.uchsc.ccp.iaa, edu.uchsc.ccp.iaa.html, edu.uchsc.ccp.iaa.matcher, edu.uchsc.ccp.knowtator, edu.uchsc.ccp.knowtator.event, edu.uchsc.ccp.knowtator.stats, edu.uchsc.ccp.knowtator.textsource, edu.uchsc.ccp.knowtator.textsource.filelines, edu.uchsc.ccp.knowtator.textsource.files, edu.uchsc.ccp.knowtator.textsource.generif, edu.uchsc.ccp.knowtator.ui, edu.uchsc.ccp.knowtator.util, edu.uchsc.ccp.knowtator.widget, edu.uchsc.ccp.knowtator.wizards, edu.uchsc.ccp.knowtator.xml, edu.uchsc.ccp.util.io

Class Hierarchy

• java.lang.Object
  • edu.uchsc.ccp.iaa.Annotation
  • edu.uchsc.ccp.knowtator.util.AnnotationCleanup
  • edu.uchsc.ccp.knowtator.ui.AnnotationSchemaMenuItemFactory
  • edu.uchsc.ccp.iaa.AnnotationSpanIndex
  • edu.uchsc.ccp.knowtator.AnnotationUtil (implements edu.uchsc.ccp.knowtator.event.SpanEditListener)
  • edu.uchsc.ccp.knowtator.util.AnnotatorUtil
  • edu.uchsc.ccp.knowtator.BrowserTextUtil
  • edu.uchsc.ccp.iaa.matcher.ClassAndSpanMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.matcher.ClassHierarchyImpl (implements edu.uchsc.ccp.iaa.matcher.ClassHierarchy)
  • edu.uchsc.ccp.iaa.matcher.ClassMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.matcher.ComplexFeatureMatchCriteria
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • edu.uchsc.ccp.knowtator.ui.AnnotationPicker (implements javax.swing.event.ListSelectionListener, java.awt.event.MouseMotionListener)
        • edu.stanford.smi.protege.util.DefaultRenderer (implements javax.swing.ListCellRenderer, javax.swing.table.TableCellRenderer, javax.swing.tree.TreeCellRenderer)
          • edu.stanford.smi.protege.ui.FrameRenderer (implements java.lang.Cloneable)
            • edu.uchsc.ccp.knowtator.ui.ColorFrameRenderer
        • edu.stanford.smi.protege.ui.Finder
          • edu.stanford.smi.protege.ui.FrameTreeFinder
            • edu.stanford.smi.protege.ui.ClsTreeFinder
              • edu.uchsc.ccp.knowtator.ui.AnnotationSchemaFinder
        • javax.swing.JLayeredPane (implements javax.accessibility.Accessible)
          • javax.swing.JDesktopPane (implements javax.accessibility.Accessible)
            • edu.stanford.smi.protege.ui.InstanceDisplay (implements edu.stanford.smi.protege.util.Disposable)
              • edu.uchsc.ccp.knowtator.ui.AnnotationInstanceDisplay (implements edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener)
              • edu.uchsc.ccp.knowtator.ui.MentionDisplay (implements edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener)
        • javax.swing.JList (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • edu.stanford.smi.protege.util.SelectableList (implements edu.stanford.smi.protege.util.Selectable)
            • edu.uchsc.ccp.knowtator.ui.AnnotationSchemaInstancesList (implements edu.uchsc.ccp.knowtator.event.RefreshAnnotationsDisplayListener, edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • edu.stanford.smi.protege.widget.AbstractWidget
            • edu.stanford.smi.protege.widget.AbstractSlotWidget (implements edu.stanford.smi.protege.widget.SlotWidget)
              • edu.stanford.smi.protege.widget.AbstractListWidget
                • edu.stanford.smi.protege.widget.InstanceListWidget
                  • edu.uchsc.ccp.knowtator.ComplexSlotMentionValueWidget (implements edu.stanford.smi.protege.util.DoubleClickListener)
                • edu.uchsc.ccp.knowtator.SlotMentionValueWidget
                • edu.stanford.smi.protege.widget.StringListWidget
                  • edu.uchsc.ccp.knowtator.SpanWidget
              • edu.stanford.smi.protege.widget.ClsFieldWidget
                • edu.uchsc.ccp.knowtator.widget.AnnotatedClassWidget
              • edu.stanford.smi.protegex.widget.contains.ContainsWidget (implements edu.stanford.smi.protegex.widget.contains.WidgetWrapperActionListener)
                • edu.uchsc.ccp.knowtator.SlotMentionWidget
              • edu.stanford.smi.protege.widget.TextComponentWidget
                • edu.stanford.smi.protege.widget.TextFieldWidget
                  • edu.uchsc.ccp.knowtator.SimpleSlotMentionValueWidget
            • edu.stanford.smi.protege.widget.AbstractTabWidget (implements edu.stanford.smi.protege.widget.TabWidget)
              • edu.uchsc.ccp.knowtator.Knowtator (implements java.awt.event.ActionListener, edu.uchsc.ccp.knowtator.event.FastAnnotateListener, edu.uchsc.ccp.knowtator.event.FilterChangedListener, edu.uchsc.ccp.knowtator.event.NotifyTextChangeListener, edu.uchsc.ccp.knowtator.event.RefreshAnnotationsDisplayListener, edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener, edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener)
          • edu.uchsc.ccp.knowtator.ui.SpanEditPanel (implements java.awt.event.ActionListener)
          • edu.uchsc.ccp.knowtator.textsource.TextSourceSelector (implements java.awt.event.ActionListener, edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener, edu.uchsc.ccp.knowtator.textsource.TextSourceCollectionChangeListener)
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JEditorPane
            • javax.swing.JTextPane
              • edu.uchsc.ccp.knowtator.ui.KnowtatorTextPane (implements edu.uchsc.ccp.knowtator.event.AnnotationCreatedListener, edu.uchsc.ccp.knowtator.event.RefreshAnnotationsDisplayListener)
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • edu.stanford.smi.protege.util.SelectableTree (implements java.awt.dnd.Autoscroll, edu.stanford.smi.protege.util.Disposable, edu.stanford.smi.protege.util.Selectable)
            • edu.uchsc.ccp.knowtator.ui.AnnotationSchemaTree (implements edu.uchsc.ccp.knowtator.event.RefreshAnnotationsDisplayListener, edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener, edu.stanford.smi.protege.util.SelectionListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • edu.uchsc.ccp.knowtator.wizards.FindAnnotateDialog (implements java.awt.event.ActionListener, javax.swing.event.CaretListener, edu.uchsc.ccp.knowtator.event.SelectedSpanChangeListener, edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener)
            • edu.uchsc.ccp.knowtator.ui.ModalDialog (implements edu.stanford.smi.protege.util.Disposable)
            • edu.uchsc.ccp.knowtator.wizards.WizardFrame
  • edu.uchsc.ccp.knowtator.util.ConsensusAnnotations
  • edu.uchsc.ccp.knowtator.util.ConsensusSet
  • edu.uchsc.ccp.knowtator.wizards.CreateConsensusSetWizard (implements java.awt.event.ActionListener)
  • edu.uchsc.ccp.knowtator.textsource.DefaultTextSource (implements edu.uchsc.ccp.knowtator.textsource.TextSource)
    • edu.uchsc.ccp.knowtator.textsource.filelines.FileLineTextSource
      • edu.uchsc.ccp.knowtator.textsource.generif.GeneRIFTextSource
    • edu.uchsc.ccp.knowtator.textsource.files.FileTextSource
  • edu.uchsc.ccp.knowtator.DisplayColors
  • edu.uchsc.ccp.knowtator.event.EventHandler
  • java.util.EventObject (implements java.io.Serializable)
    • edu.uchsc.ccp.knowtator.event.AnnotationCreatedEvent
    • edu.uchsc.ccp.knowtator.event.CurrentAnnotationsChangeEvent
    • edu.uchsc.ccp.knowtator.event.FilterChangedEvent
    • edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeEvent
    • edu.uchsc.ccp.knowtator.event.SelectedClsChangeEvent
    • edu.uchsc.ccp.knowtator.event.SelectedSpanChangeEvent
    • edu.uchsc.ccp.knowtator.event.SpanEditEvent
  • edu.uchsc.ccp.knowtator.util.ExportAnnotations
  • edu.uchsc.ccp.iaa.matcher.FeatureMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.util.io.FileCopy
  • edu.uchsc.ccp.util.io.FileReadingUtil
  • edu.uchsc.ccp.knowtator.FilterUtil
  • edu.stanford.smi.protege.event.FrameAdapter (implements edu.stanford.smi.protege.event.FrameListener)
    • edu.uchsc.ccp.knowtator.util.ConsensusSet.ConsensusFrameAdapter
  • edu.uchsc.ccp.iaa.html.HTMLUtil
  • edu.uchsc.ccp.iaa.IAA
  • edu.uchsc.ccp.iaa.html.IAA2HTML
  • edu.uchsc.ccp.knowtator.wizards.IAAWizard (implements java.awt.event.ActionListener, javax.swing.event.CaretListener)
  • edu.uchsc.ccp.knowtator.stats.KnowtatorIAA
  • edu.uchsc.ccp.knowtator.KnowtatorManager (implements edu.uchsc.ccp.knowtator.event.AnnotationCreatedListener, edu.uchsc.ccp.knowtator.event.CurrentAnnotationsChangedListener, edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener)
  • edu.uchsc.ccp.knowtator.KnowtatorProjectUtil
  • edu.uchsc.ccp.iaa.matcher.MatchResult
  • edu.uchsc.ccp.knowtator.MentionUtil
  • edu.uchsc.ccp.knowtator.util.MergeAnnotations
  • edu.uchsc.ccp.iaa.matcher.OverlappingSpanMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.knowtator.ProjectSettings
  • edu.uchsc.ccp.knowtator.util.ProjectUtil
  • edu.uchsc.ccp.knowtator.util.ProtegeUtil
  • edu.uchsc.ccp.knowtator.SlotMentionWidget.SlotMentionComparator (implements java.util.Comparator<T>)
  • edu.uchsc.ccp.iaa.Span (implements java.lang.Comparable<T>)
  • edu.uchsc.ccp.knowtator.Span (implements java.lang.Comparable<T>)
  • edu.uchsc.ccp.iaa.matcher.SpanMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.html.SpanMatcherHTML
  • edu.uchsc.ccp.iaa.matcher.SpansExactComplexFeatureMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.matcher.SpansExactSimpleFeatureMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.matcher.SpansOverlapSimpleFeatureMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.knowtator.SpanUtil (implements edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener)
  • edu.uchsc.ccp.iaa.matcher.SubclassMatcher (implements edu.uchsc.ccp.iaa.matcher.Matcher)
  • edu.uchsc.ccp.iaa.html.SubclassMatcherHTML
  • edu.uchsc.ccp.knowtator.ui.SwingUtils
  • edu.uchsc.ccp.knowtator.textsource.TextSourceChangedEvent
  • edu.uchsc.ccp.knowtator.textsource.TextSourceChangeEvent
  • edu.uchsc.ccp.knowtator.textsource.TextSourceCollection
    • edu.uchsc.ccp.knowtator.textsource.filelines.FileLinesTextSourceCollection
      • edu.uchsc.ccp.knowtator.textsource.generif.GeneRIFTextSourceCollection
    • edu.uchsc.ccp.knowtator.textsource.files.FileTextSourceCollection
  • edu.uchsc.ccp.knowtator.textsource.TextSourceCollectionChangeEvent
  • edu.uchsc.ccp.knowtator.TextSourceUtil
  • edu.uchsc.ccp.knowtator.ui.TextViewer (implements edu.uchsc.ccp.knowtator.event.FilterChangedListener, edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • edu.uchsc.ccp.knowtator.util.ConsensusException
      • edu.uchsc.ccp.iaa.IAAException
      • edu.uchsc.ccp.knowtator.xml.KnowtatorXMLException
      • java.lang.RuntimeException
        • edu.uchsc.ccp.knowtator.InvalidSpanException
      • edu.uchsc.ccp.knowtator.textsource.TextSourceAccessException
  • edu.uchsc.ccp.knowtator.wizards.WizardUtil
  • edu.uchsc.ccp.knowtator.xml.XMLConstants
  • edu.uchsc.ccp.knowtator.xml.XMLExport
  • edu.uchsc.ccp.knowtator.xml.XMLImport

Interface Hierarchy

• edu.uchsc.ccp.iaa.matcher.ClassHierarchy
• java.util.EventListener
  • edu.uchsc.ccp.knowtator.event.AnnotationCreatedListener
  • edu.uchsc.ccp.knowtator.event.CurrentAnnotationsChangedListener
  • edu.uchsc.ccp.knowtator.event.FastAnnotateListener
  • edu.uchsc.ccp.knowtator.event.FilterChangedListener
  • edu.uchsc.ccp.knowtator.event.NotifyTextChangeListener
  • edu.uchsc.ccp.knowtator.event.RefreshAnnotationsDisplayListener
  • edu.uchsc.ccp.knowtator.event.SelectedAnnotationChangeListener
  • edu.uchsc.ccp.knowtator.event.SelectedClsChangeListener
  • edu.uchsc.ccp.knowtator.event.SelectedSpanChangeListener
  • edu.uchsc.ccp.knowtator.event.SpanEditListener
• edu.uchsc.ccp.iaa.matcher.Matcher
• edu.uchsc.ccp.knowtator.ui.ModalDialog.CloseCallback
• edu.uchsc.ccp.knowtator.textsource.TextSource
• edu.uchsc.ccp.knowtator.textsource.TextSourceChangeListener
• edu.uchsc.ccp.knowtator.textsource.TextSourceCollectionChangeListener
• edu.uchsc.ccp.knowtator.textsource.TextSourceIterator