edu.uchsc.ccp.knowtator.textsource.generif
Class GeneRIFTextSource

java.lang.Object
  edu.uchsc.ccp.knowtator.textsource.DefaultTextSource
      edu.uchsc.ccp.knowtator.textsource.filelines.FileLineTextSource
          edu.uchsc.ccp.knowtator.textsource.generif.GeneRIFTextSource

All Implemented Interfaces:

TextSource

public class GeneRIFTextSource
extends FileLineTextSource

Field Summary

static String	CLS_NAME
static String	ENTREZ_GENE_SLOT_NAME
static String	PMID_SLOT_NAME

Fields inherited from class edu.uchsc.ccp.knowtator.textsource.DefaultTextSource

name, protegeClsName, text

Constructor Summary

GeneRIFTextSource(String id, String[] entrezIDs, String pmid, String text)

Method Summary

Instance	createTextSourceInstance(KnowledgeBase knowledgeBase) This is the generic method for creating a "knowtator text source" instance from a TextSource object.
String[]	getEntrezIDs()

Methods inherited from class edu.uchsc.ccp.knowtator.textsource.DefaultTextSource

equals, getName, getProtegeClsName, getText, getText, getText, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

CLS_NAME

public static final String CLS_NAME

See Also:

Constant Field Values

ENTREZ_GENE_SLOT_NAME

public static final String ENTREZ_GENE_SLOT_NAME

See Also:

Constant Field Values

PMID_SLOT_NAME

public static final String PMID_SLOT_NAME

See Also:

Constant Field Values

Constructor Detail

GeneRIFTextSource

public GeneRIFTextSource(String id,
                         String[] entrezIDs,
                         String pmid,
                         String text)

Method Detail

createTextSourceInstance

public Instance createTextSourceInstance(KnowledgeBase knowledgeBase)

Description copied from interface: TextSource

This is the generic method for creating a "knowtator text source" instance from a TextSource object. All instances of "knowtator text source" can be created in a very simplistic way from a TextSource object. An instance of the class specified by the name returned by getProtegeClsName() is created with the name returned by getName()

Specified by:

createTextSourceInstance in interface TextSource

Overrides:

createTextSourceInstance in class DefaultTextSource

Returns:

may return null if textSource.getProtegeClsName() is not a known cls name. Otherwise the new Protege instance that has been created.

getEntrezIDs

public String[] getEntrezIDs()