edu.uchsc.ccp.knowtator.stats
Class KnowtatorIAA

java.lang.Object
  edu.uchsc.ccp.knowtator.stats.KnowtatorIAA

public class KnowtatorIAA
extends Object

Constructor Summary

KnowtatorIAA(File outputDirectory, SimpleInstance filter, Collection<SimpleInstance> textSources, Project project, Collection<Slot> simpleFeatureSlots, Collection<Slot> complexFeatureSlots, KnowtatorManager manager, TextSourceCollection tsc, AnnotationUtil annotationUtil, MentionUtil mentionUtil, FilterUtil filterUtil)

Method Summary

void	closeHTML()
Annotation	convertAnnotation(SimpleInstance knowtatorAnnotation, boolean convertComplexFeatures)
static FeatureMatcher	createFeatureMatcher(SimpleInstance slotMatcherConfig, KnowtatorProjectUtil kpu, String matcherName)
Map<Annotation,String>	getAnnotationTexts()
static Set<Slot>	getComplexSlotsFromMatcherConfig(SimpleInstance slotMatcherConfig, KnowtatorProjectUtil kpu)
static Set<Slot>	getSimpleSlotsFromMatcherConfig(SimpleInstance slotMatcherConfig, KnowtatorProjectUtil kpu)
Map<String,Set<Annotation>>	getTextSourceAnnotationsMap()
IAA	runClassAndSpanIAA()
IAA	runClassIAA()
IAA	runFeatureMatcherIAA(SimpleInstance slotMatcherConfig)
IAA	runFeatureMatcherIAA(SimpleInstance slotMatcherConfig, String matcherName)
IAA	runSpanIAA()
void	runSubclassIAA()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

KnowtatorIAA

public KnowtatorIAA(File outputDirectory,
                    SimpleInstance filter,
                    Collection<SimpleInstance> textSources,
                    Project project,
                    Collection<Slot> simpleFeatureSlots,
                    Collection<Slot> complexFeatureSlots,
                    KnowtatorManager manager,
                    TextSourceCollection tsc,
                    AnnotationUtil annotationUtil,
                    MentionUtil mentionUtil,
                    FilterUtil filterUtil)
             throws IAAException

Throws:

IAAException

Method Detail

closeHTML

public void closeHTML()

getAnnotationTexts

public Map<Annotation,String> getAnnotationTexts()

convertAnnotation

public Annotation convertAnnotation(SimpleInstance knowtatorAnnotation,
                                    boolean convertComplexFeatures)
                             throws IAAException

Throws:

IAAException

createFeatureMatcher

public static FeatureMatcher createFeatureMatcher(SimpleInstance slotMatcherConfig,
                                                  KnowtatorProjectUtil kpu,
                                                  String matcherName)
                                           throws IAAException

Throws:

IAAException

runFeatureMatcherIAA

public IAA runFeatureMatcherIAA(SimpleInstance slotMatcherConfig)
                         throws IAAException

Throws:

IAAException

runFeatureMatcherIAA

public IAA runFeatureMatcherIAA(SimpleInstance slotMatcherConfig,
                                String matcherName)
                         throws IAAException

Throws:

IAAException

runClassIAA

public IAA runClassIAA()
                throws IAAException

Throws:

IAAException

runSpanIAA

public IAA runSpanIAA()
               throws IAAException

Throws:

IAAException

runClassAndSpanIAA

public IAA runClassAndSpanIAA()
                       throws IAAException

Throws:

IAAException

runSubclassIAA

public void runSubclassIAA()
                    throws IAAException

Throws:

IAAException

getSimpleSlotsFromMatcherConfig

public static Set<Slot> getSimpleSlotsFromMatcherConfig(SimpleInstance slotMatcherConfig,
                                                        KnowtatorProjectUtil kpu)

getComplexSlotsFromMatcherConfig

public static Set<Slot> getComplexSlotsFromMatcherConfig(SimpleInstance slotMatcherConfig,
                                                         KnowtatorProjectUtil kpu)

getTextSourceAnnotationsMap

public Map<String,Set<Annotation>> getTextSourceAnnotationsMap()