Constant Field Values


Contents
edu.uchsc.*

edu.uchsc.ccp.iaa.Annotation
public static final int IGNORE_SPANS_COMPARISON 3
public static final int SPANS_EXACT_COMPARISON 2
public static final int SPANS_OVERLAP_COMPARISON 1

edu.uchsc.ccp.iaa.matcher.MatchResult
public static final int MATCH_RESULT_UNASSIGNED -1
public static final int NONTRIVIAL_MATCH 0
public static final int NONTRIVIAL_NONMATCH 2
public static final int TRIVIAL_MATCH 1
public static final int TRIVIAL_NONMATCH 3

edu.uchsc.ccp.knowtator.BrowserTextUtil
public static final String ANNOTATION_TEXT "[text]"

edu.uchsc.ccp.knowtator.FilterUtil
public static final int ANY_FILTER 0
public static final int CONSENSUS_FILTER 1
public static final int NONCONSENSUS_FILTER 2

edu.uchsc.ccp.knowtator.Knowtator
public static final String CHANGE_SORT_METHOD "CHANGE_SORT_METHOD"
public static final String KNOWTATOR_MANAGER "KNOWTATOR_MANAGER"
public static final String SELECT_FILTER "SELECT_FILTER"
public static final String SELECT_NEXT_ANNOTATION "SELECT_NEXT_ANNOTATION"
public static final String SELECT_NEXT_ANNOTATION_FILTER "SELECT_NEXT_ANNOTATION_FILTER"
public static final String SELECT_PREVIOUS_ANNOTATION "SELECT_PREVIOUS_ANNOTATION"
public static final String SELECT_PREVIOUS_ANNOTATION_FILTER "SELECT_PREVIOUS_ANNOTATION_FILTER"

edu.uchsc.ccp.knowtator.KnowtatorProjectUtil
public static final String ACTIVE_FILTERS_SLOT_NAME "knowtator_active_filters"
public static final String ANNOTATED_MENTION_SLOT_NAME "knowtator_annotated_mention"
public static final String ANNOTATION_ANNOTATOR_SLOT_NAME "knowtator_annotation_annotator"
public static final String ANNOTATION_CLS_NAME "knowtator annotation"
public static final String ANNOTATION_COMMENT_SLOT_NAME "knowtator_annotation_comment"
public static final String ANNOTATION_CREATION_DATE_SLOT_NAME "knowtator_annotation_creation_date"
public static final String ANNOTATION_SPAN_SLOT_NAME "knowtator_annotation_span"
public static final String ANNOTATION_TEXT_SLOT_NAME "knowtator_annotation_text"
public static final String ANNOTATION_TEXT_SOURCE_SLOT_NAME "knowtator_annotation_text_source"
public static final String ANNOTATOR_AFFILIATION_SLOT_NAME "knowtator_annotation_annotator_affiliation"
public static final String ANNOTATOR_CLS_NAME "knowtator annotator"
public static final String ANNOTATOR_FIRST_NAME_SLOT_NAME "knowtator_annotation_annotator_firstname"
public static final String ANNOTATOR_ID_SLOT_NAME "knowtator_annotator_id"
public static final String ANNOTATOR_LAST_NAME_SLOT_NAME "knowtator_annotation_annotator_lastname"
public static final String ANNOTATOR_TEAM_CLS_NAME "knowtator annotator team"
public static final String ANNOTATOR_TEAM_MEMBERS_SLOT_NAME "knowtator_annotator_team_members"
public static final String ANNOTATOR_TEAM_NAME_SLOT_NAME "knowtator_annotator_team_name"
public static final String BOOLEAN_SLOT_MENTION_CLS_NAME "knowtator boolean slot mention"
public static final String CLASS_MATCH_CRITERIA_SLOT_NAME "knowtator_class_match_criteria"
public static final String CLASS_MENTION_CLS_NAME "knowtator class mention"
public static final String COLOR_ASSIGNMENT_CLS_NAME "knowtator color assignment"
public static final String COLOR_ASSIGNMENTS_SLOT_NAME "knowtator_color_assignments"
public static final String COLOR_CLASS_SLOT_NAME "knowtator_color_class"
public static final String COMPLEX_SLOT_MATCH_CRITERIA_CLS_NAME "knowtator complex slot match criteria"
public static final String COMPLEX_SLOT_MENTION_CLS_NAME "knowtator complex slot mention"
public static final String CONFIGURATION_CLS_NAME "knowtator configuration"
public static final String CONSENSUS_FILTER_CLS_NAME "knowtator consensus filter"
public static final String CONSENSUS_SET_CLS_NAME "knowtator consensus set"
public static final String CONSENSUS_SET_CONSENSUS_FILTER_SLOT_NAME "knowtator_consensus_filter"
public static final String CONSENSUS_SET_INDIVIDUAL_FILTER_SLOT_NAME "knowtator_individual_filter"
public static final String CONSENSUS_SET_TEAM_ANNOTATOR_SLOT_NAME "knowtator_team_annotator"
public static final String CURRENT_VERSION "V007"
public static final String DISPLAY_COLOR_B_SLOT_NAME "knowtator_display_color_B"
public static final String DISPLAY_COLOR_CLS_NAME "knowtator display color"
public static final String DISPLAY_COLOR_G_SLOT_NAME "knowtator_display_color_G"
public static final String DISPLAY_COLOR_NAME_SLOT_NAME "knowtator_display_color_name"
public static final String DISPLAY_COLOR_R_SLOT_NAME "knowtator_display_color_R"
public static final String DISPLAY_COLOR_SLOT_NAME "knowtator_display_color"
public static final String FADE_UNSELECTED_ANNOTATIONS "knowtator_fade_unselected_annotations"
public static final String FILTER_ANNOTATOR_SLOT_NAME "knowtator_filter_annotator"
public static final String FILTER_CLS_NAME "knowtator filter"
public static final String FILTER_NAME_SLOT_NAME "knowtator_filter_name"
public static final String FILTER_SET_SLOT_NAME "knowtator_filter_set"
public static final String FILTER_TYPE_SLOT_NAME "knowtator_filter_type"
public static final String FILTER_TYPES_NOT_SELECTABLE_FROM_TEXT_VIEWER "knowtator_types_not_selectable_from_text_viewer"
public static final String FLOAT_SLOT_MENTION_CLS_NAME "knowtator float slot mention"
public static final String HUMAN_ANNOTATOR_CLS_NAME "knowtator human annotator"
public static final String INSTANCE_MENTION_CLS_NAME "knowtator instance mention"
public static final String INTEGER_SLOT_MENTION_CLS_NAME "knowtator integer slot mention"
public static final String KNOWTATOR_SUPPORT_CLASSES_VERSION "KNOWTATOR_SUPPORT_CLASSES_VERSION"
public static final String KNOWTATOR_SUPPORT_CLS_NAME "knowtator support class"
public static final String KNOWTATOR_VERSION_CLS_NAME "knowtator version"
public static final String MENTION_ANNOTATION_SLOT_NAME "knowtator_mention_annotation"
public static final String MENTION_CLASS_SLOT_NAME "knowtator_mention_class"
public static final String MENTION_CLS_NAME "knowtator mention"
public static final String MENTION_INSTANCE_SLOT_NAME "knowtator_mention_instance"
public static final String MENTION_SLOT_SLOT_NAME "knowtator_mention_slot"
public static final String MENTION_SLOT_VALUE_SLOT_NAME "knowtator_mention_slot_value"
public static final String MENTIONED_IN_SLOT_NAME "knowtator_mentioned_in"
public static final String PROPOGATE_TRIVIAL_MATCH_SLOT_NAME "knowtator_propogate_trivial_match"
public static final String ROOT_CLSES_SLOT_NAME "knowtator_root_clses"
public static final String SELECTED_ANNOTATION_SET_SLOT_NAME "knowtator_selected_annotation_set"
public static final String SELECTED_ANNOTATOR_SLOT_NAME "knowtator_selected_annotator"
public static final String SELECTED_FILTER_SLOT_NAME "knowtator_selected_filter"
public static final String SELECTED_FILTERS_CLS_NAME "knowtator selected filters"
public static final String SELECTED_FILTERS_SLOT_NAME "knowtator_selected_filters"
public static final String SET_CLS_NAME "knowtator set"
public static final String SET_DESCRIPTION_SLOT_NAME "knowtator_set_description"
public static final String SET_NAME_SLOT_NAME "knowtator_set_name"
public static final String SET_SLOT_NAME "knowtator_set"
public static final String SIMPLE_SLOT_MATCH_CRITERIA_CLS_NAME "knowtator simple slot match criteria"
public static final String SLOT_MATCH_CRITERIA_SLOT_NAME "knowtator_slot_match_criteria"
public static final String SLOT_MATCHER_CONFIG_CLS_NAME "knowtator slot matcher config"
public static final String SLOT_MATCHER_SIMPLE_SLOTS_SLOT_NAME "knowtator_slot_matcher_simple_slots"
public static final String SLOT_MATCHER_SLOT_SLOT_NAME "knowtator_slot_matcher_slot"
public static final String SLOT_MENTION_CLS_NAME "knowtator slot mention"
public static final String SLOT_MENTION_SLOT_NAME "knowtator_slot_mention"
public static final String SPAN_MATCH_CRITERIA_SLOT_NAME "knowtator_span_match_criteria"
public static final String STRING_SLOT_MENTION_CLS_NAME "knowtator string slot mention"
public static final String SUBTEXT_SLOT_SLOT_NAME "knowtator_subtext_slot"
public static final String TEXT_SOURCE_CLS_NAME "knowtator text source"
public static final String TOKEN_REGEX_SLOT_NAME "knowtator_token_regex"
public static final String TSC_IMPLEMENTATION_SLOT_NAME "knowtator_tsc_implementation"
public static final String TSC_IMPLEMENTATIONS_CLS_NAME "knowtator text source collection implementations"
public static final String UNVERSIONED "UNVERSIONED"
public static final String V001 "V001"
public static final String V002 "V002"
public static final String V003 "V003"
public static final String V004 "V004"
public static final String V005 "V005"
public static final String V006 "V006"
public static final String V007 "V007"
public static final String VERSION_BEING_UPDATED "VERSION_BEING_UPDATED"

edu.uchsc.ccp.knowtator.SpanUtil
public static final String GROW_ANNOTATION_LEFT "GROW_ANNOTATION_LEFT"
public static final String GROW_ANNOTATION_LEFT_WORD "GROW_ANNOTATION_LEFT_WORD"
public static final String GROW_ANNOTATION_RIGHT "GROW_ANNOTATION_RIGHT"
public static final String GROW_ANNOTATION_RIGHT_WORD "GROW_ANNOTATION_RIGHT_WORD"
public static final String SHRINK_ANNOTATION_LEFT "SHRINK_ANNOTATION_LEFT"
public static final String SHRINK_ANNOTATION_LEFT_WORD "SHRINK_ANNOTATION_LEFT_WORD"
public static final String SHRINK_ANNOTATION_RIGHT "SHRINK_ANNOTATION_RIGHT"
public static final String SHRINK_ANNOTATION_RIGHT_WORD "SHRINK_ANNOTATION_RIGHT_WORD"

edu.uchsc.ccp.knowtator.textsource.DefaultTextSource
public static final String CLS_NAME "knowtator text source"

edu.uchsc.ccp.knowtator.textsource.filelines.FileLinesTextSourceCollection
public static final String CLS_NAME "file line text source"
public static final String DISPLAY_NAME "Lines from file"

edu.uchsc.ccp.knowtator.textsource.filelines.FileLineTextSource
public static final String CLS_NAME "file line text source"

edu.uchsc.ccp.knowtator.textsource.files.FileTextSource
public static final String CLS_NAME "file text source"

edu.uchsc.ccp.knowtator.textsource.files.FileTextSourceCollection
public static final String DISPLAY_NAME "Local Files"

edu.uchsc.ccp.knowtator.textsource.generif.GeneRIFTextSource
public static final String CLS_NAME "generifs text source"
public static final String ENTREZ_GENE_SLOT_NAME "generif_entrez_gene"
public static final String PMID_SLOT_NAME "generif_pmid"

edu.uchsc.ccp.knowtator.textsource.generif.GeneRIFTextSourceCollection
public static final String CLS_NAME "generifs text source"
public static final String DISPLAY_NAME "GeneRIFs"

edu.uchsc.ccp.knowtator.ui.AnnotationSchemaMenuItemFactory
public static final int SELECTION_ITEMS_COUNT_THRESHOLD 20

edu.uchsc.ccp.knowtator.ui.KnowtatorTextPane
public static final int DASHED_LINES 2
public static final int NO_LINES 0
public static final int SOLID_LINES 1
public static final int VERTICAL_LINES 3

edu.uchsc.ccp.knowtator.ui.ModalDialog
public static final int MODE_CLOSE 14
public static final int MODE_OK_CANCEL 11
public static final int MODE_YES_NO 13
public static final int MODE_YES_NO_CANCEL 12
public static final int OPTION_CANCEL 4
public static final int OPTION_CLOSE 5
public static final int OPTION_NO 3
public static final int OPTION_OK 1
public static final int OPTION_YES 2
public static final int RESULT_ERROR 6

edu.uchsc.ccp.knowtator.wizards.CreateConsensusSetWizard
public static final String CREATE_BUTTON_CLICKED "CREATE_BUTTON_CLICKED"
public static final String FILTER_INSTRUCTIONS "Please select a filter that describes the set of annotations that you want to create a consensus set for. The selected filter must have either two annotators or two annotation sets specified. If you have not yet defined an appropriate filter, then please exit out of this wizard and create one. Please seehttp://knowtator.sourceforge.net//filters.shtml for information about filters."
public static final String NAME_INSTRUCTIONS "Please enter a descriptive name for your consensus set. If you plan to have only one consensus set in your annotation project, then selecting the default name should be fine."
public static final String TEXT_SOURCES_INSTRUCTIONS "Please select the text sources that you want included in the consensus set creation."
public static final String TO_FILTER_FRAME "TO_FILTER_FRAME"
public static final String TO_NAME_FRAME "TO_NAME_FRAME"
public static final String TO_TEXTSOURCES_FRAME "TO_TEXTSOURCES_FRAME"
public static final String TO_WELCOME_FRAME "TO_WELCOME_FRAME"
public static final String WELCOME_MESSAGE "This wizard allows you to create a consensus set from existing, merged annotations. Typically, text sources will be individually annotated in separate projects and then merged together into a single project at which point consensus mode is used. This action will not delete or modify existing annotations. A consensus set consists of annotations that have been copied from the set of annotations defined by the filter that you will choose in this wizard. Consensus mode will then act on these copied annotations. For more information about how consensus mode works please consult the online documentation. http://knowtator.sourceforge.net//consensus.shtml"

edu.uchsc.ccp.knowtator.wizards.IAAWizard
public static final String ADD_SLOT_MATCHER_CLICKED "ADD_SLOT_MATCHER_CLICKED"
public static final String GO_CLICKED "GO_CLICKED"
public static final String IAA_CONFIG "IAA_CONFIG"
public static final String IAA_CONFIG_DISPLAY "IAA_CONFIG_DISPLAY"
public static final String IAA_DIRECTORY "IAA_DIRECTORY"
public static final String IAA_FILTER "IAA_FILTER"
public static final String IAA_TEXTSOURCES "IAA_TEXTSOURCES"
public static final String IAA_WELCOME_MESSAGE "This wizard allows you to configure how inter-annotator agreement (IAA) metrics will be calculated. All IAA results are written to local html files that are veiwable using a web browser. Please consult available documentation for details on how IAA is calculated and what the results mean. Calculating the IAA may take some time depending on how many matchers are used and how many annotations are in your project. Please be patient!"
public static final String REMOVE_SLOT_MATCHER_CLICKED "REMOVE_SLOT_MATCHER_CLICKED"
public static final String TO_CONFIG_FRAME "TO_CONFIG_FRAME"
public static final String TO_FILTER_FRAME "TO_FILTER_FRAME"
public static final String TO_OUTPUT_FRAME "TO_OUTPUT_FRAME"
public static final String TO_TEXTSOURCES_FRAME "TO_TEXTSOURCES_FRAME"
public static final String TO_WELCOME_FRAME "TO_WELCOME_FRAME"

edu.uchsc.ccp.knowtator.wizards.WizardFrame
public static final String CANCEL "CANCEL"
public static final String NEXT "NEXT"
public static final String PREVIOUS "PREVIOUS"

edu.uchsc.ccp.knowtator.xml.XMLConstants
public static final String ANNOTATION_ELEMENT_NAME "annotation"
public static final String ANNOTATIONS_ELEMENT_NAME "annotations"
public static final String ANNOTATOR_ELEMENT_NAME "annotator"
public static final String BOOLEAN_SLOT_MENTION_ELEMENT_NAME "booleanSlotMention"
public static final String BOOLEAN_SLOT_MENTION_VALUE_ELEMENT_NAME "booleanSlotMentionValue"
public static final String CLASS_MENTION_ELEMENT_NAME "classMention"
public static final String COMMENT_ELEMENT_NAME "annotationComment"
public static final String COMPLEX_SLOT_MENTION_ELEMENT_NAME "complexSlotMention"
public static final String COMPLEX_SLOT_MENTION_VALUE_ELEMENT_NAME "complexSlotMentionValue"
public static final String CREATION_DATE_ELEMENT_NAME "creationDate"
public static final String FLOAT_SLOT_MENTION_ELEMENT_NAME "floatSlotMention"
public static final String FLOAT_SLOT_MENTION_VALUE_ELEMENT_NAME "floatSlotMentionValue"
public static final String HAS_SLOT_MENTION_ELEMENT_NAME "hasSlotMention"
public static final String ID_ATTRIBUTE_NAME "id"
public static final String INSTANCE_MENTION_ELEMENT_NAME "instanceMention"
public static final String INTEGER_SLOT_MENTION_ELEMENT_NAME "integerSlotMention"
public static final String INTEGER_SLOT_MENTION_VALUE_ELEMENT_NAME "integerSlotMentionValue"
public static final String MENTION_CLASS_ELEMENT_NAME "mentionClass"
public static final String MENTION_ELEMENT_NAME "mention"
public static final String MENTION_INSTANCE_ELEMENT_NAME "mentionInstance"
public static final String MENTION_SLOT_ELEMENT_NAME "mentionSlot"
public static final String SPAN_ELEMENT_NAME "span"
public static final String SPAN_END_ATTRIBUTE_NAME "end"
public static final String SPAN_START_ATTRIBUTE_NAME "start"
public static final String SPANNED_TEXT_ELEMENT_NAME "spannedText"
public static final String STRING_SLOT_MENTION_ELEMENT_NAME "stringSlotMention"
public static final String STRING_SLOT_MENTION_VALUE_ELEMENT_NAME "stringSlotMentionValue"
public static final String TEXT_SOURCE_ATTRIBUTE_NAME "textSource"
public static final String VALUE_ATTRIBUTE_NAME "value"

edu.uchsc.ccp.knowtator.xml.XMLExport
public static final String XML_EXPORT_DIRECTORY "XML_EXPORT_FILE"

edu.uchsc.ccp.knowtator.xml.XMLImport
public static final String XML_IMPORT_DIRECTORY "XML_IMPORT_FILE"